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Publications

Peer-reviewed publications
  1. Can correct protein models be identified? Björn Wallner and Arne Elofsson (2003). Protein Sci. 12(5):1073-1086. PDF
  2. Automatic consensus based fold recognition using Pcons, ProQ and Pmodeller. Björn Wallner, Huisheng Fang and Arne Elofsson (2003). Proteins. 53 Suppl 6:534-541. PDF
  3. Using evolutionary information for the query and target improves fold recognition. Björn Wallner, Huisheng Fang, Tomas Ohlson, Johannes Frey-Skött and Arne Elofsson (2004). Proteins. 54(2):342-350. PDF
  4. Profile-profile methods provide improved fold-recognition. A study of different profile-profile alignment methods. Tomas Ohlson, Björn Wallner and Arne Elofsson (2004). Proteins. 57(1):188-197. PDF
  5. All are not equal: A benchmark of different homology modeling programs. Björn Wallner and Arne Elofsson (2005). Protein Sci., 14(5):1315-1327. PDF
  6. Tertiary Windowing to Detect Positive Diversifying Selection. Ann-Charlotte Berglund, Björn Wallner, Arne Elofsson and David A. Liberles. (2005). J.Mol.Evol., 60(4):499-504. PDF .
  7. Pcons5: combining consensus, structural evaluation and fold recognition scores. Björn Wallner and Arne Elofsson (2005). Bioinformatics., 21(23):4248-4254. PDF
  8. Identification of correct regions in protein models using structural, alignment and consensus information. Björn Wallner and Arne Elofsson (2006). Protein Sci., 15(4):900-913. PDF
  9. Pcons.net: Protein Structure Prediction Meta Server. Björn Wallner, Per Larsson and Arne Elofsson (2007). Nucleic Acid Res., 35:W369-374. PDF
  10. Prediction of global and local model quality in CASP7 using Pcons and ProQ. Björn Wallner, and Arne Elofsson (2007). Proteins., 69 Suppl 8:184-193. PDF.
  11. Using multiple templates to imporve quality of homology models in automated homology modeling. Per Larsson, Björn Wallner, Erik Lindahl and Arne Elofsson (2008). Protein Sci. ,17(6):990-1002. link
  12. Prediction of membrane protein structures with complex topologies using limited constraints. Björn Wallner, Patrick Barth and David Baker (2009). PNAS,106(5):1409-1414. PDF
Books
  1. Improved fold recognition by using the Pcons consensus approach. Huisheng Fang, Björn Wallner, Jesper Lundström, Christer von Wowern and Arne Elofsson (2002). Chapter 16 in Protein Structure Prediction:Bioinformatic Approach, IUL. PDF
  2. Protein Structure Prediction: Model Building and Quality Assessment. Björn Wallner (2005). Doctoral Thesis Stockholm University defended September 30, 2005. PDF